![]() ![]() TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic ,ĪPPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant.ĪPPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS P2 , This is defined in detail on Canonical, The GENCODE set is the gene set for human and mouse. ![]() Gene/transcipt that contains an open reading frame (ORF).Protein codingĪ single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. ![]()
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